usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 19.5803125 -5.73728125 13.02465625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2069 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 963 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 951 Number of spheres polar: 241, nonpolar: 532, out of current total: 951 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.58831 29.54009 -15.50024 4.24666 3.06765 23.02350 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 504 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 420 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 375 Spheres center of coords (x y z): 20.74704296 -4.96133474666667 15.6610749866667 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.44942031916396 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 32