usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 44.4491538461538 15.4053846153846 46.7864615384615 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1601 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 694 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 684 Number of spheres polar: 187, nonpolar: 399, out of current total: 684 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 34.66286 54.29501 5.40813 25.27791 36.81191 56.56461 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 224 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 181 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 154 Spheres center of coords (x y z): 43.2628744155844 12.1378534415584 48.1101854545455 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.67622419062935 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 26