usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 18.9502647058824 -7.51338235294118 13.5277941176471 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1872 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 833 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 824 Number of spheres polar: 151, nonpolar: 488, out of current total: 824 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.05334 28.92848 -17.49808 2.37290 3.57263 23.51171 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 418 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 372 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 324 Spheres center of coords (x y z): 20.8386664814815 -7.14928688271605 16.1149584567901 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.51990556861367 Final number of output spheres is: 60 Number of polar spheres: 8 Number of nonpolar spheres: 48 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 34