usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 18.4831818181818 -4.99822727272727 12.3107727272727 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1757 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 899 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 899 Number of spheres polar: 180, nonpolar: 554, out of current total: 899 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.63544 28.42634 -14.94463 4.99619 2.35367 22.27167 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 284 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 241 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 177 Spheres center of coords (x y z): 20.8007418079096 -5.86928700564972 16.3276051977401 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.77552968214975 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 22