usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): -8.84415151515151 -28.8035151515151 44.4536060606061 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2247 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1114 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1114 Number of spheres polar: 215, nonpolar: 664, out of current total: 1114 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -18.83582 1.15447 -38.79445 -20.12072 34.45451 54.21087 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 355 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 305 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 296 Spheres center of coords (x y z): -6.89761695945946 -31.2222761486487 42.3220660810811 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.49057834891438 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 33