usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): -23.441875 11.57325 -39.3454375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1409 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 839 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 839 Number of spheres polar: 285, nonpolar: 443, out of current total: 839 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -33.42700 -15.75856 1.67156 21.43669 -49.29083 -29.43144 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 375 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 315 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 267 Spheres center of coords (x y z): -23.7003333333333 14.024417752809 -37.6963576779026 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.22327905946643 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 16