Distance from surface specified: 1.80 There are 33 ligand heavy atoms Ligand center of coords (x y z): 1.43963636363636 67.0150606060606 83.5295151515152 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 14427 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 12619 WARNING: removing a crystallographic sphere that is distance 1.94289551957896 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 12433 Number of spheres polar: 5988, nonpolar: 4653, out of current total: 12433 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.55560 15.43940 53.01880 80.37780 69.53880 97.51040 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1492 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 838 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 639 Spheres center of coords (x y z): 2.97500782472614 70.5122791862285 79.4201943661973 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 9.72312256480742 Final number of output spheres is: 200 Number of polar spheres: 68 Number of nonpolar spheres: 104 Number of spheres that are near neither polar nor nonpolar receptor atoms: 28 Final number of spheres that are from crystallographic ligand: 32