DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-6-03.c.bkslab.org 13-Mar-12 14:16:49 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: /raid3/people/mysinger/pxc/dude/original/dud_dec_pde5_0004.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1727880 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min -17.69600 45.65600 64.54900 grid max 21.30400 84.15600 103.5490 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 38 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 14.63939 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 C00758494 4489 283137 31 184 208.0 0.50 E C00758494 3 -0.56 -21.12 3.86 -1.91 -19.74 2 C00758494 1340 86493 31 41 64.3 0.19 E C00758494 2 -1.41 -23.49 4.14 -1.33 -22.09 3 C00758494 5219 327151 31 34 235.1 0.69 E C00758494 2 -1.88 -23.23 4.42 -2.97 -23.65 4 C00758494 4489 257864 31 152 189.6 0.46 E C00758494 3 -0.58 -21.26 3.85 -1.90 -19.88 5 C00758494 1275 50966 31 34 27.5 0.11 E C00758494 2 -1.03 -19.19 2.87 -1.66 -19.01 6 C00758494 5730 467306 31 33 375.0 0.84 E C00758494 2 -0.34 -24.31 5.63 -1.70 -20.73 7 C00758494 4489 208991 31 146 143.3 0.38 E C00758494 3 -1.00 -22.63 5.36 -0.90 -19.17 8 C00758494 1047 40567 31 31 32.0 0.08 E C00758494 2 -0.44 -20.76 4.25 -1.10 -18.05 9 C00758494 5225 298287 31 33 137.6 0.63 E C00758494 2 -0.12 -21.15 4.34 -2.35 -19.28 10 C00758494 4273 40276 31 6 10.0 0.15 E C00758494 3 -1.01 -20.90 3.96 -1.01 -18.96 11 C00758494 1340 7752 31 3 14.1 0.06 E C00758494 2 -0.51 -21.35 4.74 -0.80 -17.92 12 C00758494 5725 51476 31 3 80.7 0.36 E C00758494 2 -1.73 -18.53 3.57 -2.71 -19.39 13 C02647149 3291 1844127 29 9361 1455.9 2.27 E C02647149 3 -0.60 -34.41 7.53 -4.18 -31.67 14 C02647149 4028 2812352 29 9072 2060.0 2.99 E C02647149 4 -0.39 -40.09 8.27 -5.03 -37.24 15 C02647149 1327 473662 29 623 317.5 0.56 E C02647149 2 -0.46 -23.63 3.67 -2.99 -23.41 16 C02647149 0 0 29 1395 0.00 no_match 17 C01019741 6581 4515222 28 282 3909.9 6.37 E C01019741 3 0.74 -34.04 6.99 -2.75 -29.06 18 C01019741 5899 4649645 28 1188 3733.0 6.50 E C01019741 3 -2.91 -36.42 8.07 -2.78 -34.03 19 C01019741 3182 1081742 28 94 762.4 2.24 E C01019741 2 -4.97 -33.80 7.91 -2.71 -33.58 20 C01019741 6620 3751860 28 285 3114.0 5.37 E C01019741 3 -3.79 -30.16 7.16 -3.00 -29.79 21 C01019741 7396 5933937 28 1224 4270.4 8.21 E C01019741 3 -2.73 -36.44 7.98 -2.90 -34.09 22 C01019741 3503 1129583 28 95 1253.3 2.44 E C01019741 2 0.60 -34.04 7.25 -1.88 -28.08 23 C01019741 6644 4407368 28 339 1755.7 7.46 E C01019741 3 -5.23 -29.72 6.49 -2.52 -30.97 24 C01019741 7400 6041365 28 1540 3888.3 8.79 E C01019741 3 -4.04 -35.03 8.28 -2.75 -33.53 25 C01019741 2531 806507 28 113 514.1 1.77 E C01019741 2 -6.46 -26.79 8.02 -3.06 -28.29 26 C01019741 6626 5145089 28 333 4094.4 7.62 E C01019741 3 -3.73 -29.25 8.83 -3.38 -27.53 27 C01019741 5898 7132286 28 1716 2685.5 7.77 E C01019741 3 -4.35 -34.60 8.03 -2.84 -33.77 28 C01019741 2193 664819 28 111 464.0 1.46 E C01019741 2 -4.80 -34.97 8.01 -2.78 -34.55 29 C00673709 3700 3036759 29 482 1851.6 6.48 E C00673709 2 -4.12 -28.17 6.46 -3.05 -28.88 30 C00673709 2967 2028408 29 9660 1698.0 3.44 E C00673709 3 -2.79 -34.44 8.60 -2.73 -31.36 31 C00673709 7676 3705501 29 482 3752.0 6.74 E C00673709 2 -4.19 -33.30 8.88 -4.45 -33.06 32 C00673709 3700 3617961 29 486 2851.6 6.62 E C00673709 2 -3.61 -29.07 6.82 -2.68 -28.54 33 C00673709 2967 2052877 29 9660 1430.9 3.41 E C00673709 3 -1.49 -33.67 7.51 -3.38 -31.02 34 C00673709 8033 3856164 29 486 2069.2 7.00 E C00673709 2 -0.73 -32.65 8.71 -3.29 -27.96 35 C00673709 3700 3151294 29 476 1912.0 6.67 E C00673709 2 -8.92 -28.81 9.27 -2.89 -31.35 36 C00673709 2967 1996853 29 9486 308.9 3.39 E C00673709 3 -5.44 -32.93 8.30 -2.61 -32.68 37 C00673709 6869 3303502 29 476 979.1 5.98 E C00673709 2 -0.95 -35.09 8.45 -3.47 -31.06 38 C00673709 3700 3576436 29 470 2161.8 6.57 E C00673709 2 -6.99 -28.71 9.19 -3.14 -29.65 39 C00673709 2967 2033101 29 10332 1352.0 3.42 E C00673709 3 -10.04 -32.90 9.35 -3.08 -36.66 40 C00673709 6527 3335987 29 470 2840.0 6.06 E C00673709 2 -2.30 -35.88 8.55 -3.90 -33.53 41 C01019742 6649 5002867 29 438 4184.1 7.72 E C01019742 3 -7.30 -29.55 7.70 -2.39 -31.54 42 C01019742 5900 5930367 29 2522 3429.4 7.99 E C01019742 3 -6.10 -33.20 7.40 -2.49 -34.40 43 C01019742 1833 640929 29 146 146.1 1.48 E C01019742 2 -0.78 -32.83 6.77 -1.77 -28.60 44 C00673713 3700 3106796 28 402 1517.3 6.08 E C00673713 2 -2.90 -33.78 7.79 -2.31 -31.20 45 C00673713 2967 2275854 28 10298 1578.8 3.60 E C00673713 3 -1.91 -35.99 9.19 -3.43 -32.13 46 C00673713 5069 2485679 28 402 1933.7 4.25 E C00673713 2 -0.79 -34.48 9.06 -3.15 -29.36 47 C00673715 3700 2388410 27 203 2578.0 4.64 E C00673715 2 -5.42 -34.83 9.29 -2.96 -33.92 48 C00673715 2967 2037956 27 3952 1095.7 2.96 E C00673715 3 -0.46 -38.06 9.63 -3.67 -32.56 49 C00673715 2302 932807 27 203 900.0 1.55 E C00673715 2 -5.20 -27.58 9.53 -3.80 -27.04 50 C00673715 3700 2378190 27 194 1324.0 4.67 E C00673715 2 -8.98 -33.00 9.43 -2.65 -35.21 51 C00673715 2967 1985827 27 4023 1485.4 2.90 E C00673715 3 -1.08 -36.01 9.36 -3.25 -30.98 52 C00673715 2790 1058549 27 194 780.5 1.75 E C00673715 2 -1.51 -24.66 5.39 -1.73 -22.51 53 C00673715 3700 2551172 27 265 3171.9 5.10 E C00673715 2 0.14 -33.53 7.63 -2.67 -28.43 54 C00673715 2967 2136586 27 5700 1598.0 3.15 E C00673715 3 -1.42 -36.68 9.42 -3.14 -31.82 55 C00673715 1981 844824 27 265 423.1 1.37 E C00673715 2 -2.03 -30.93 8.00 -2.55 -27.51 56 C00673715 3700 2483888 27 271 3158.2 4.94 E C00673715 2 -2.30 -30.61 7.03 -2.82 -28.70 57 C00673715 2967 2219967 27 6222 417.9 3.25 E C00673715 3 -2.87 -32.88 8.59 -2.45 -29.62 58 C00673715 2267 1127649 27 271 415.3 1.85 E C00673715 2 -2.02 -31.40 7.23 -2.95 -29.14 EOF: /raid3/people/mysinger/pxc/dude/original/dud_dec_pde5_0004.db.gz end of file encountered total minimization steps = 8728853 for debugging, time = 213.6400 solvation corrected scores: (a) 1 C02647149 score: -37.240 nathvy = 29 nconfs = 9072 2 C00673709 score: -36.665 nathvy = 29 nconfs = 10332 3 C00673715 score: -35.210 nathvy = 27 nconfs = 194 4 C01019741 score: -34.546 nathvy = 28 nconfs = 111 5 C01019742 score: -34.400 nathvy = 29 nconfs = 2522 6 C01019741 score: -34.086 nathvy = 28 nconfs = 1224 7 C01019741 score: -34.030 nathvy = 28 nconfs = 1188 8 C00673715 score: -33.922 nathvy = 27 nconfs = 203 9 C01019741 score: -33.767 nathvy = 28 nconfs = 1716 10 C01019741 score: -33.578 nathvy = 28 nconfs = 94 11 C01019741 score: -33.533 nathvy = 28 nconfs = 1540 12 C00673709 score: -33.533 nathvy = 29 nconfs = 470 13 C00673709 score: -33.064 nathvy = 29 nconfs = 482 14 C00673709 score: -32.683 nathvy = 29 nconfs = 9486 15 C00673715 score: -32.558 nathvy = 27 nconfs = 3952 16 C00673713 score: -32.130 nathvy = 28 nconfs = 10298 17 C00673715 score: -31.824 nathvy = 27 nconfs = 5700 18 C02647149 score: -31.667 nathvy = 29 nconfs = 9361 19 C01019742 score: -31.539 nathvy = 29 nconfs = 438 20 C00673709 score: -31.355 nathvy = 29 nconfs = 9660 21 C00673709 score: -31.349 nathvy = 29 nconfs = 476 22 C00673713 score: -31.195 nathvy = 28 nconfs = 402 23 C00673709 score: -31.061 nathvy = 29 nconfs = 476 24 C00673709 score: -31.020 nathvy = 29 nconfs = 9660 25 C00673715 score: -30.983 nathvy = 27 nconfs = 4023 26 C01019741 score: -30.973 nathvy = 28 nconfs = 339 27 C01019741 score: -29.793 nathvy = 28 nconfs = 285 28 C00673709 score: -29.649 nathvy = 29 nconfs = 470 29 C00673715 score: -29.617 nathvy = 27 nconfs = 6222 30 C00673713 score: -29.358 nathvy = 28 nconfs = 402 31 C00673715 score: -29.139 nathvy = 27 nconfs = 271 32 C01019741 score: -29.062 nathvy = 28 nconfs = 282 33 C00673709 score: -28.884 nathvy = 29 nconfs = 482 34 C00673715 score: -28.702 nathvy = 27 nconfs = 271 35 C01019742 score: -28.604 nathvy = 29 nconfs = 146 36 C00673709 score: -28.541 nathvy = 29 nconfs = 486 37 C00673715 score: -28.434 nathvy = 27 nconfs = 265 38 C01019741 score: -28.291 nathvy = 28 nconfs = 113 39 C01019741 score: -28.080 nathvy = 28 nconfs = 95 40 C00673709 score: -27.960 nathvy = 29 nconfs = 486 41 C01019741 score: -27.533 nathvy = 28 nconfs = 333 42 C00673715 score: -27.513 nathvy = 27 nconfs = 265 43 C00673715 score: -27.044 nathvy = 27 nconfs = 203 44 C00758494 score: -23.652 nathvy = 31 nconfs = 34 45 C02647149 score: -23.413 nathvy = 29 nconfs = 623 46 C00673715 score: -22.512 nathvy = 27 nconfs = 194 47 C00758494 score: -22.086 nathvy = 31 nconfs = 41 48 C00758494 score: -20.727 nathvy = 31 nconfs = 33 49 C00758494 score: -19.885 nathvy = 31 nconfs = 152 50 C00758494 score: -19.738 nathvy = 31 nconfs = 184 51 C00758494 score: -19.391 nathvy = 31 nconfs = 3 52 C00758494 score: -19.284 nathvy = 31 nconfs = 33 53 C00758494 score: -19.166 nathvy = 31 nconfs = 146 54 C00758494 score: -19.014 nathvy = 31 nconfs = 34 55 C00758494 score: -18.956 nathvy = 31 nconfs = 6 56 C00758494 score: -18.053 nathvy = 31 nconfs = 31 57 C00758494 score: -17.919 nathvy = 31 nconfs = 3 Date and Time: 13-Mar-12 14:20:25 elapsed time (sec): 213.7400