usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 26.8282 33.4843333333333 200.848001333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1303 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 631 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 631 Number of spheres polar: 161, nonpolar: 403, out of current total: 631 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.86272 36.78673 23.49349 43.39648 191.12788 210.76706 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 293 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 262 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 186 Spheres center of coords (x y z): 26.7110826344086 29.8026448924731 203.074899784946 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.109947016605 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 44 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 15