usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 26.6873888888889 33.4806111111111 198.759443888889 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1446 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 693 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 693 Number of spheres polar: 204, nonpolar: 437, out of current total: 693 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.81046 36.49935 23.48853 42.39015 188.87164 208.65819 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 288 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 246 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 210 Spheres center of coords (x y z): 27.8772942380952 31.1251058095238 199.482421761905 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.90915860535761 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 41 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 18