usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 251.03159 105.599 -37.0811363636364 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1897 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 529 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 529 Number of spheres polar: 238, nonpolar: 239, out of current total: 529 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 241.31573 260.98306 95.73796 115.56718 -47.07576 -27.51011 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 237 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 185 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 139 Spheres center of coords (x y z): 250.111081079137 105.005917769784 -36.5760179856115 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.28456684794043 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 22