usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 250.7400015 105.15265 -36.78755 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1879 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 528 WARNING: removing a crystallographic sphere that is distance 268.608759611447 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 269.643203901007 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 270.745773121207 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 274.596604937133 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 275.581459009818 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 273.952661617258 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 276.822243869599 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 273.558491531519 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 277.579966490739 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 270.133614096802 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 272.862116721981 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 278.430880481279 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 271.177966918996 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 272.450661186572 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 279.04091095214 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 272.070692580072 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 272.681632451326 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 279.305163058222 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 278.925054604279 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 279.895882220514 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 0 Number of spheres polar: 0, nonpolar: 0, out of current total: 0 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 1 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 1 Crystallographic spheres are present, so doing continuity based on crystallographic spheres Only 0 spheres are continuous, so increasing continuity by 0.5 to be 3.5 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 4 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 4.5 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 5 After continuity checking, number of spheres is: 0 Final number of output spheres is: 0 Number of polar spheres: 0 Number of nonpolar spheres: 0 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 0