usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 27.2493157894737 34.32 209.056262105263 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1380 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 686 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 686 Number of spheres polar: 236, nonpolar: 379, out of current total: 686 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.42262 37.18655 24.35110 43.49513 199.09990 219.01604 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 280 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 231 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 184 Spheres center of coords (x y z): 28.5159786956522 32.47043375 209.886769782609 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.4287840809648 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 39 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 19