usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 251.280668 108.483133333333 -39.5705666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2002 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 724 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 724 Number of spheres polar: 176, nonpolar: 480, out of current total: 724 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 241.30917 261.18750 100.09448 118.44147 -49.56049 -29.60249 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 209 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 168 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 147 Spheres center of coords (x y z): 252.388190408163 110.752465442177 -40.4433255102041 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.65149976526982 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 30