usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): -20.5611428571429 -50.0823333333333 1.90038095238095 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1777 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 703 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 703 Number of spheres polar: 242, nonpolar: 381, out of current total: 703 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -30.53380 -10.66250 -57.79908 -40.08450 -8.09441 11.89935 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 188 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 141 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 109 Spheres center of coords (x y z): -20.403738440367 -47.1992211926606 1.57498724770642 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.01706549637282 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 21