usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 26.8393888888889 34.2284444444444 208.292499444444 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1539 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 613 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 613 Number of spheres polar: 174, nonpolar: 400, out of current total: 613 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.86405 35.65476 24.24331 42.57918 198.35899 218.27861 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 280 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 238 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 210 Spheres center of coords (x y z): 27.9024503333334 31.8394739047619 209.188991142857 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.78472544625862 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 41 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 18