usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 250.758590909091 105.062545454545 -36.7745909090909 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1713 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 458 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 458 Number of spheres polar: 168, nonpolar: 258, out of current total: 458 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 240.84872 260.68692 96.05264 115.00792 -46.56073 -26.83563 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 198 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 167 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 135 Spheres center of coords (x y z): 251.144518444444 106.49934162963 -38.0427174814815 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.07748993168999 Final number of output spheres is: 60 Number of polar spheres: 24 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 22