usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 26.2447857142857 33.5302142857143 199.948498571429 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1228 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 601 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 591 Number of spheres polar: 173, nonpolar: 325, out of current total: 591 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.42282 35.96585 23.55863 42.29516 189.94881 209.94646 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 289 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 237 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 172 Spheres center of coords (x y z): 26.8962279069767 29.483456744186 202.7005 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.72518252893663 Final number of output spheres is: 60 Number of polar spheres: 7 Number of nonpolar spheres: 45 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 14