usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 250.908682272727 105.500045454545 -36.879 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1587 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 446 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 446 Number of spheres polar: 172, nonpolar: 229, out of current total: 446 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 241.13377 260.62601 96.11459 115.49006 -46.83577 -26.92513 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 195 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 165 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 132 Spheres center of coords (x y z): 251.45051469697 106.857424015152 -37.6126166666667 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 2.70862662904937 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 22