usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 26.5543684210526 33.5872105263158 201.282 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1879 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 745 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 745 Number of spheres polar: 216, nonpolar: 481, out of current total: 745 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.63804 36.47645 23.60084 42.84213 191.35895 211.25015 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 325 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 279 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 240 Spheres center of coords (x y z): 27.5723471666667 31.0296479166667 202.549301083333 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.48746235836309 Final number of output spheres is: 60 Number of polar spheres: 25 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 19