usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 68.9350666666667 22.3628666666667 189.829134666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1465 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 638 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 638 Number of spheres polar: 197, nonpolar: 387, out of current total: 638 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 58.94646 78.64432 12.41161 31.88592 183.37738 199.81985 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 284 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 236 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 203 Spheres center of coords (x y z): 68.0633025615764 21.7822580788177 192.431103694581 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.52358366445701 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 40 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 15