usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): 27.4438 33.5658 211.513698 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 862 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 527 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 527 Number of spheres polar: 142, nonpolar: 315, out of current total: 527 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.44543 37.22493 23.57423 43.20282 201.56604 221.49684 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 238 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 203 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 156 Spheres center of coords (x y z): 27.357364551282 29.4723496794872 214.012988205128 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.23657934893922 Final number of output spheres is: 60 Number of polar spheres: 6 Number of nonpolar spheres: 51 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 10