usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 26.6174117647059 33.6995882352941 201.931178823529 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1535 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 671 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 671 Number of spheres polar: 209, nonpolar: 410, out of current total: 671 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.66772 36.43227 23.70373 43.54064 192.30499 211.88303 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 303 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 254 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 174 Spheres center of coords (x y z): 26.7122740804598 29.8242266091954 204.296258563218 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.99692003245436 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 41 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 17