usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 251.584732 107.246933333333 -38.3058666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1577 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 704 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 704 Number of spheres polar: 234, nonpolar: 398, out of current total: 704 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 241.69362 261.41464 100.09876 117.23499 -48.27913 -28.32630 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 175 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 139 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 84 Spheres center of coords (x y z): 251.15540297619 105.248450833333 -36.5312545238095 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.77448689690817 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 15