usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): -32.211 42.7081153846154 -5.45173076923077 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1842 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 770 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 752 Number of spheres polar: 164, nonpolar: 488, out of current total: 752 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -42.19772 -22.21494 32.72102 52.59834 -15.44856 4.51234 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 400 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 346 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 199 Spheres center of coords (x y z): -33.9891230653266 39.5540543718593 -7.98363050251256 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.69338461240434 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 26