usefragsph not on
There are 19 ligand heavy atoms
Ligand center of coords (x y z): 21.1686315789474 -51.9952105263158 38.41
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1609
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 532
WARNING: removing a crystallographic sphere that is distance 1.19397487410749 angstroms from closest receptor atom
WARNING: removing a crystallographic sphere that is distance 1.18065320903304 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 530
Number of spheres polar: 170, nonpolar: 291, out of current total: 530
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.45580 31.03265 -58.15966 -42.01666 28.41948 48.39930
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 246
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 194
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 99
Spheres center of coords (x y z): 20.5041847474747 -49.3779021212121 38.8019827272727
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 2.96547932029712
Final number of output spheres is: 60
Number of polar spheres: 8
Number of nonpolar spheres: 38
Number of spheres that are near neither polar nor nonpolar receptor atoms: 14
Final number of spheres that are from crystallographic ligand: 17