usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 26.6174117647059 33.6995882352941 201.931178823529 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1536 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 671 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 671 Number of spheres polar: 202, nonpolar: 408, out of current total: 671 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.66772 36.43227 23.70373 43.54064 192.30499 211.88303 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 303 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 253 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 174 Spheres center of coords (x y z): 26.7094325287356 29.8207848850575 204.293367298851 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.9954362808067 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 44 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 17