usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 20.0639 49.311 11.7420666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2025 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 745 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 745 Number of spheres polar: 175, nonpolar: 513, out of current total: 745 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.08642 30.01988 39.34902 58.22855 1.74770 21.70755 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 333 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 282 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 176 Spheres center of coords (x y z): 18.5414707386364 49.6433752840909 10.6843811363636 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.6628355929376 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 41 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 30