Distance from surface specified: 1.80 There are 30 ligand heavy atoms Ligand center of coords (x y z): 20.0639 49.311 11.7420666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 19660 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 13979 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 13720 Number of spheres polar: 6421, nonpolar: 6455, out of current total: 13720 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.06680 34.01140 35.31500 63.15220 -2.24440 25.73900 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1359 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 663 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 624 Spheres center of coords (x y z): 17.1011208333333 44.6127330128205 9.48154743589743 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 12.2430100511831 Final number of output spheres is: 200 Number of polar spheres: 103 Number of nonpolar spheres: 88 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 30