DOCK version 3.5.54, compiled on 20110906 CPU, Date, and Time: node-6-13.c.bkslab.org 6-Feb-12 20:04:28 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../database_link/dud_cox1_lig_01.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1694336 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min 0.9210014 32.04800 -7.577000 grid max 40.42100 68.04800 32.42300 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 43 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 12.98240 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 C00601283 6142 245091 25 28 362.0 0.36 E C00601283 4 -7.94 -16.16 29.20 -5.71 -0.60 2 C00601283 11240 65060 25 14 8.0 0.19 E C00601283 2 -8.73 7.88 28.70 -5.78 22.07 3 C00001281 9500 180338 19 2 111.0 0.33 E C00001281 2 0.87 -22.24 25.72 -5.16 -0.81 4 C00001281 8831 179201 19 2 210.0 0.31 E C00001281 2 0.78 -21.65 25.68 -5.15 -0.34 5 C00901016 1827 14251 25 16 0.0 0.03 E C00901016 3 6.44 15.55 34.72 -4.81 51.90 6 C00901016 1827 13623 25 16 18.0 0.03 E C00901016 3 3.72 31.07 33.60 -5.08 63.31 7 C12341529 3918 15395 26 8 4.0 0.04 E C12341529 3 -11.41 37.32 39.63 -4.43 61.11 8 C12341529 3918 15967 26 8 6.0 0.05 E C12341529 3 -11.42 37.38 39.60 -4.43 61.13 9 C01845036 12157 1206710 16 4 4214.2 1.90 E C01845036 2 -6.46 -23.49 5.22 -2.62 -27.35 10 C01845036 4105 226114 16 4 836.4 0.38 E C01845036 2 -6.33 -23.54 5.20 -2.60 -27.27 11 C00012342 5034 535744 22 1376 59.4 0.37 E C00012342 4 0.66 -18.26 6.56 0.00 -11.05 12 C00012342 5034 346882 22 1536 60.0 0.27 E C00012342 4 -1.83 -16.11 6.30 -0.29 -11.93 13 C00001995 5027 24973 21 1 105.5 0.13 E C00001995 1 -4.15 -27.27 8.75 -4.88 -27.54 14 C00001995 5024 25202 21 1 72.6 0.12 E C00001995 1 -4.07 -27.21 8.80 -4.88 -27.35 15 C03814498 2948 100430 21 66 37.7 0.14 E C03814498 2 -4.81 -21.58 7.24 -2.13 -21.27 16 C03814498 5694 1280522 21 198 1511.6 0.95 E C03814498 4 -4.79 -35.74 7.50 -1.76 -34.79 17 C00105216 2886 887257 17 10 1686.0 1.02 E C00105216 3 -6.67 -28.94 23.02 -3.74 -16.33 18 C00001554 2673 606812 10 2 2171.4 0.59 E C00001554 2 -9.02 -15.40 22.63 -1.24 -3.03 19 C00001427 6879 213941 19 19 171.7 0.24 E C00001427 2 -5.32 -17.17 24.89 -4.98 -2.58 20 C00001427 6711 1397077 19 38 1546.0 1.14 E C00001427 3 -12.15 -29.11 26.79 -5.09 -19.56 21 C03814490 7940 422048 25 56 376.1 0.42 E C03814490 4 -3.15 -16.05 32.32 -5.85 7.28 22 C03814490 11240 102182 25 14 56.0 0.22 E C03814490 2 -6.26 16.70 35.85 -5.99 40.30 23 C00125031 7719 431268 20 18 558.5 0.53 E C00125031 2 -8.00 -25.86 23.60 -4.26 -14.53 24 C00125031 3845 401060 20 36 472.2 0.32 E C00125031 3 -9.39 -27.13 22.83 -4.70 -18.40 25 C00057503 10825 5822356 18 90 2391.9 4.19 E C00057503 3 -11.62 -30.29 25.66 -4.06 -20.31 26 C00057503 2958 262766 18 22 96.6 0.26 E C00057503 2 -3.77 -23.14 27.55 -4.04 -3.39 27 C00057504 10801 5362573 18 64 4382.9 3.86 E C00057504 3 -11.34 -31.40 25.98 -4.18 -20.93 28 C00057504 2958 260396 18 22 197.6 0.26 E C00057504 2 -8.44 -23.39 31.07 -4.04 -4.80 29 C00002063 3695 1748703 22 3942 539.7 1.10 E C00002063 3 -8.95 -31.97 38.95 -5.52 -7.49 30 C00002063 3695 873338 22 350 366.1 0.54 E C00002063 3 -8.70 -32.51 34.10 -6.28 -13.39 31 C00002191 10801 1065426 19 14 142.9 1.16 E C00002191 2 -5.63 -27.48 33.62 -4.42 -3.91 32 C00002191 8901 1872645 19 32 2458.1 1.92 E C00002191 3 -2.66 -27.84 24.30 -4.88 -11.07 33 C00000391 8366 322105 21 18 468.2 0.53 E C00000391 3 -7.36 -32.54 29.51 -5.22 -15.61 34 C00000391 7639 67054 21 6 138.0 0.21 E C00000391 2 -6.98 -30.59 28.99 -5.20 -13.78 35 C00008667 7299 819779 18 8 1245.8 1.00 E C00008667 3 -12.19 -27.66 25.46 -5.15 -19.53 36 C00008667 9279 153162 18 4 170.8 0.28 E C00008667 2 -10.11 -18.39 25.91 -4.90 -7.49 37 C00003955 8366 274848 22 20 312.0 0.34 E C00003955 3 -8.82 -31.71 32.28 -5.71 -13.97 38 C00003955 7693 44989 22 6 58.0 0.15 E C00003955 2 -2.50 -25.44 36.80 -5.66 3.19 39 C00000053 3695 1533662 13 12 3040.7 1.26 E C00000053 3 -11.45 -19.93 25.82 -3.10 -8.66 40 C00020241 7608 295367 18 5 399.3 0.42 E C00020241 2 -9.04 -19.39 27.35 -4.38 -5.46 41 C00020241 5816 697881 18 10 702.0 0.58 E C00020241 3 -9.35 -24.27 24.81 -4.87 -13.68 42 C00020243 1867 145614 18 6 287.0 0.15 E C00020243 3 -10.93 -29.41 23.68 -3.54 -20.20 43 C00020243 7142 283787 18 6 152.1 0.35 E C00020243 2 -8.40 -28.23 23.65 -3.59 -16.57 44 C00001655 6159 221576 19 7 212.3 0.28 E C00001655 2 -0.90 -26.03 28.27 -4.49 -3.15 45 C00001655 5816 482319 19 14 219.9 0.40 E C00001655 3 -7.98 -27.18 27.81 -4.45 -11.78 EOF: ../database_link/dud_cox1_lig_01.db.gz end of file encountered total minimization steps = 4268166 for debugging, time = 30.45000 solvation corrected scores: (a) 1 C03814498 score: -34.787 nathvy = 21 nconfs = 198 2 C00001995 score: -27.542 nathvy = 21 nconfs = 1 3 C00001995 score: -27.352 nathvy = 21 nconfs = 1 4 C01845036 score: -27.349 nathvy = 16 nconfs = 4 5 C01845036 score: -27.267 nathvy = 16 nconfs = 4 6 C03814498 score: -21.274 nathvy = 21 nconfs = 66 7 C00057504 score: -20.932 nathvy = 18 nconfs = 64 8 C00057503 score: -20.311 nathvy = 18 nconfs = 90 9 C00020243 score: -20.202 nathvy = 18 nconfs = 6 10 C00001427 score: -19.561 nathvy = 19 nconfs = 38 11 C00008667 score: -19.534 nathvy = 18 nconfs = 8 12 C00125031 score: -18.396 nathvy = 20 nconfs = 36 13 C00020243 score: -16.574 nathvy = 18 nconfs = 6 14 C00105216 score: -16.333 nathvy = 17 nconfs = 10 15 C00000391 score: -15.609 nathvy = 21 nconfs = 18 16 C00125031 score: -14.532 nathvy = 20 nconfs = 18 17 C00003955 score: -13.966 nathvy = 22 nconfs = 20 18 C00000391 score: -13.783 nathvy = 21 nconfs = 6 19 C00020241 score: -13.677 nathvy = 18 nconfs = 10 20 C00002063 score: -13.395 nathvy = 22 nconfs = 350 21 C00012342 score: -11.928 nathvy = 22 nconfs = 1536 22 C00001655 score: -11.784 nathvy = 19 nconfs = 14 23 C00002191 score: -11.072 nathvy = 19 nconfs = 32 24 C00012342 score: -11.052 nathvy = 22 nconfs = 1376 25 C00000053 score: -8.657 nathvy = 13 nconfs = 12 26 C00008667 score: -7.494 nathvy = 18 nconfs = 4 27 C00002063 score: -7.487 nathvy = 22 nconfs = 3942 28 C00020241 score: -5.464 nathvy = 18 nconfs = 5 29 C00057504 score: -4.795 nathvy = 18 nconfs = 22 30 C00002191 score: -3.912 nathvy = 19 nconfs = 14 31 C00057503 score: -3.391 nathvy = 18 nconfs = 22 32 C00001655 score: -3.146 nathvy = 19 nconfs = 7 33 C00001554 score: -3.029 nathvy = 10 nconfs = 2 34 C00001427 score: -2.581 nathvy = 19 nconfs = 19 35 C00001281 score: -0.812 nathvy = 19 nconfs = 2 36 C00601283 score: -0.602 nathvy = 25 nconfs = 28 37 C00001281 score: -0.341 nathvy = 19 nconfs = 2 38 C00003955 score: 3.188 nathvy = 22 nconfs = 6 39 C03814490 score: 7.279 nathvy = 25 nconfs = 56 40 C00601283 score: 22.074 nathvy = 25 nconfs = 14 41 C03814490 score: 40.302 nathvy = 25 nconfs = 14 42 C00901016 score: 51.905 nathvy = 25 nconfs = 16 43 C12341529 score: 61.110 nathvy = 26 nconfs = 8 44 C12341529 score: 61.131 nathvy = 26 nconfs = 8 45 C00901016 score: 63.315 nathvy = 25 nconfs = 16 Date and Time: 6-Feb-12 20:05:08 elapsed time (sec): 30.5100