usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 27.7748181818182 24.6155 46.9775909090909 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1692 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 711 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 711 Number of spheres polar: 226, nonpolar: 427, out of current total: 711 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.80412 37.73721 14.68881 34.57800 36.98574 56.67727 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 192 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 152 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 126 Spheres center of coords (x y z): 27.7519873809524 23.0994297619048 47.1293151587302 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.64159953794261 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 22