usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 24.6636153846154 21.7471153846154 16.4508846153846 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1693 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 757 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 757 Number of spheres polar: 149, nonpolar: 533, out of current total: 757 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.67659 34.65550 11.81114 30.61685 7.03119 26.28544 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 360 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 310 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 283 Spheres center of coords (x y z): 24.310119434629 18.688462720848 17.8111782332155 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.0039003445683 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 41 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 26