usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 27.1154736842105 24.09 14.936 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1184 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 590 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 590 Number of spheres polar: 203, nonpolar: 295, out of current total: 590 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.11952 37.05984 14.12051 29.47286 4.93922 24.91515 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 167 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 130 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 116 Spheres center of coords (x y z): 27.6195465517241 22.1047856034483 16.1594638793103 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.4658329726885 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 19