usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 21.9489090909091 15.4958636363636 66.9430909090909 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1585 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 697 WARNING: removing a crystallographic sphere that is distance 66.703243864148 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 67.9215373280081 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 73.1914827148624 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 74.4449011685824 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 73.160063115063 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 69.1896160850745 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 74.6924963701174 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 71.9848291308662 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 74.3906111549031 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 67.6686637151939 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 75.0499118453846 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 68.240305216199 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 75.1721635580618 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 69.8461490491781 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 75.8346964258445 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 71.0794964810528 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 75.6979698340715 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 73.3474918862261 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 74.4068082503208 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 72.4272398134845 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 73.1115775031561 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 71.1785537714837 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 0 Number of spheres polar: 0, nonpolar: 0, out of current total: 0 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 1 Crystallographic spheres are present, so doing continuity based on crystallographic spheres Only 0 spheres are continuous, so increasing continuity by 0.5 to be 3.5 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 4 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 4.5 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 5 After continuity checking, number of spheres is: 0 Final number of output spheres is: 0 Number of polar spheres: 0 Number of nonpolar spheres: 0 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 0