MakeDOCK 2.0, modified by J.Irwin and M.Mysinger.
Previous versions by D.M.Lorber, B.Q.Wei, A.N.Kirschner, and N.Huang
Using scripts in /raid5/people/mysinger/xyz/dockenv.
Creating binding-site residue list
Creating molecular surface

real	0m44.031s
user	0m0.615s
sys	0m0.438s
Creating sphgen spheres
 Enter name of sphere cluster file:
 Enter cluster number to process (<0 = all):  Generate surfaces as well as pdb files (<N>/Y)?  Enter name for output PDB file name:

Cluster  0:1623 spheres.
 379. 379. 379. 381. 383. 383. 383. 383. 383. 383. 383. 383. 384. 384. 384. 384. 384. 384. 384. 384. 404. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 405. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 406. 408. 408. 408. 411. 411. 411. 411. 411. 413. 414. 414. 414. 414. 414. 414. 414. 414. 415. 415. 415. 415. 415. 415. 415. 415. 416. 416. 416. 416. 416. 416. 416. 442. 442. 443. 443. 443. 443. 443. 443. 443. 443. 443. 443. 444. 444. 444. 448. 448. 448. 448. 448. 448. 448. 449. 449. 449. 450. 450. 450. 450. 451. 604. 604. 608. 608. 608. 608. 608. 608. 608. 608. 608. 609. 609. 609. 609. 609. 609. 609. 609. 609. 609. 609. 610. 610. 610. 610. 610. 631. 631. 631. 631. 631. 632. 633. 633. 634. 634. 634. 634. 634. 634. 634. 634. 634. 634. 634. 634. 634. 634. 634. 634. 634. 634. 634. 634. 634. 634. 634. 634. 634. 634. 634. 635. 635. 635. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 636. 638. 638. 638. 638. 638. 638. 638. 638. 638. 638. 640. 640. 644. 644. 644. 644. 644. 644. 644. 644. 644. 644. 644. 644. 644. 644. 644. 644. 645. 645. 645. 645. 645. 645. 645. 645. 645. 645. 645. 645. 645. 645. 645. 645. 645. 645. 645. 645. 645. 645. 645. 645. 645. 649. 649. 650. 650. 650. 650. 650. 650. 650. 650. 650. 650. 652. 652. 652. 652. 652. 652. 652. 652. 652. 652. 652. 652. 652. 652. 652. 652. 652. 653. 662. 662. 662. 662. 662. 662. 664. 664. 664. 664. 664. 664. 664. 664. 664. 665. 665. 665. 665. 665. 665. 666. 666. 672. 672. 672. 672. 672. 674. 674. 674. 674. 674. 674. 674. 674. 674. 674. 674. 674. 674. 674. 674. 675. 675. 675. 675. 675. 675. 675. 675. 675. 675. 675. 675. 677. 677. 677. 677. 677. 677. 677. 677. 677. 677. 677. 677. 677. 677. 677. 677. 677. 681. 682. 682. 682. 682. 682. 682. 683. 683. 683. 705. 705. 705. 705. 707. 707. 707. 707. 707. 710. 710. 710. 710. 710. 710. 710. 710. 710. 710. 710. 710. 710. 710. 710. 710. 711. 711. 711. 711. 711. 908. 908. 908. 908. 909. 909. 909. 909. 909. 909. 909. 909. 909. 909. 909. 909. 910.1247.1247.1247.1249.1251.1251.1251.1251.1251.1251.1251.1251.1251.1251.1251.1251.1251.1251.1252.1253.1253.1253.1254.1254.1254.1254.1254.1254.1324.1324.1324.1324.1324.1324.1326.1339.1339.1339.1339.1339.1339.1339.1339.1339.1339.1339.1339.1339.1339.1339.1352.1352.1352.1352.1352.1355.1355.1360.1360.1360.1360.1360.1360.1360.1360.1360.1375.1375.1375.1375.1375.1375.1375.1375.1375.1375.1375.1375.1375.1375.1375.1375.1375.1375.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1382.1389.1389.1389.1391.1391.1391.1391.1391.1391.1392.1396.1396.1396.1396.1396.1396.1398.1398.1398.1398.1398.1398.1398.1402.1402.1402.1402.1402.1402.1402.1502.1502.1503.1503.1503.1503.1504.1504.1504.1504.1514.1515.1515.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1516.1517.1517.1517.1528.1528.1528.1528.1528.1528.1528.1528.1528.1528.1528.1528.1528.1528.1528.1529.1530.1530.1537.1545.1545.1545.1551.1552.1552.1557.1557.1557.1557.1557.1557.1558.1560.1560.1560.1560.1560.1560.1560.1560.1560.1560.1560.1560.1560.1560.1560.1560.1560.2453.2453.2453.2453.2454.2454.2454.2454.2454.2454.2454.2454.2454.2454.2473.2473.2473.2498.2498.2498.2499.2499.2499.2499.2499.2499.2499.2499.2499.2499.2499.2499.2499.2499.2499.2499.2499.2499.2502.2502.2502.2502.2510.2510.2510.2510.2510.2510.2510.2510.2510.2511.2511.2511.2511.2511.2511.2511.2511.2511.2521.2521.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2529.2530.2530.2530.2530.2530.2530.2530.2534.2536.2536.2536.2536.2536.2536.2538.2539.2541.2541.2544.2544.2544.2544.2544.2544.2544.2547.2548.2552.2553.2553.2553.2553.2553.2553.2553.2553.2553.2554.2554.2554.2554.2554.2554.2556.2556.2556.2556.2556.2556.2556.2556.2556.2556.2556.2556.2556.2556.2556.2556.2556.2559.2559.2559.2559.2559.2559.2559.2559.2559.2559.2559.2559.2559.2559.2559.2559.2561.2561.2561.2561.2561.2561.2561.2561.2562.2562.2562.2562.2562.2562.2565.2565.2565.2565.2565.2565.2565.2565.2565.2565.2565.2565.2565.2567.2571.2571.2571.2571.2571.2576.2577.2577.2577.2577.2577.2577.2577.2577.2577.2577.2577.2577.2577.2577.2577.2578.2578.2578.2579.2579.2579.2579.2579.2579.2579.2579.2579.2579.2579.2579.2579.2579.2579.2579.2611.2611.2611.2611.2611.2614.2614.2614.2615.2615.2746.2746.2746.2746.2746.2746.2746.2746.2747.2749.2749.2749.2749.2749.2749.2749.2749.2749.2753.2753.2753.2753.2753.2753.2753.2753.2753.2753.2754.2754.2754.2754.2755.2757.2757.2757.2757.2757.2757.2757.2757.2757.2758.2758.2758.2758.2758.2758.2758.2758.2758.2758.2758.2758.2759.2759.2759.2760.2760.2761.2761.2761.2765.2766.2766.2766.2766.2766.2766.2766.2766.2766.2766.2766.2766.2767.2767.2767.2767.2769.2769.2769.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2772.2772.2772.2772.2772.2772.2772.2772.2772.2774.2778.2780.2780.2780.2785.2785.2785.2785.2785.2785.2785.2785.2785.2785.2785.2785.2808.2808.2808.2810.2811.2811.2811.2819.2819.2819.2819.2819.2819.2819.2819.2819.2819.2819.2819.2819.2819.2819.2819.2819.2819.2819.2819.2819.2819.2819.2819.2819.2819.2825.2826.2826.2826.2826.2826.2826.2826.2826.2830.2830.2830.2830.2833.2843.2843.2843.2843.2843.2843.2843.2843.2843.2843.2846.2846.2846.2846.2846.2846.2846.2849.2849.2849.2854.2854.2854.2854.2854.2854.2855.2855.2855.2855.2855.2855.2855.2855.2855.2855.2855.2855.2856.2856.2856.2856.2856.2856.2856.2856.2868.2868.2868.2868.2868.2868.2868.2868.3255.3255.3830.3830.3830.3830.3830.3832.3879.3879.3880.3882.3882.3883.3884.3904.3904.3904.3904.3904.3904.3904.3904.3904.3904.3904.3904.3904.3904.3904.3911.3916.3916.3917.3917.3920.3920.3920.3920.3920.3920.3920.3920.3920.3920.3920.3920.3920.3922.3932.3932.3935.3941.3941.3941.3949.3949.3949.3951.3951.3951.3951.3953.3953.3953.3957.3957.3957.3957.3957.3957.3957.3957.3957.3957.3957.3957.3957.3957.3957.3957.3957.3957.3957.3957.3957.3957.3957.3957.3957.3957.3957.3957.3957.3958.3958.3958.3958.3958.3958.3958.3958.3958.3958.3958.3958.3958.3958.3958.3958.3958.3962.3962.3962.3962.3962.3962.3962.3962.3962.3962.3962.3962.3966.3966.3966.3966.3966.3966.3966.3966.3967.3967.3967.3967.3967.3967.3977.3977.3977.3977.3977.3977.3977.3977.3977.3978.3978.3978.3978.3978.3978.3978.3980.3981.3981.3981.3981.3981.3981.3981.3981.3981.3981.3984.3984.3984.3984.3984.3984.3984.3984.3984.3984.3984.3984.3984.3984.3984.3984.3984.3984.3984.3984.3984.3984.3984.3984.3984.3995.3995.3995.3995.3995.3998.3998.3998.3998.3998.4000.4000.4000.4004.4004.4004.4006.4007.4007.4007.4007.4007.4007.4007.4007.4007.4007.4007.4007.4007.4007.4007.4007.4008.4008.4008.4008.4008.4008.4008.4008.4008.4008.4011.4011.4011.4013.4013.4014.4014.4014.4014.4014.4014.4015.4015.4015.4015.4015.4015.4015.4016.4016.4016.4016.4016.4016.4023.4023.4024.4025.4025.4025.4025.4025.4025.4025.4025.4027.4027.4027.4027.4027.4027.4027.4027.4027.4027.4027.4028.4029.4029.4029.4035.4035.4035.4035.4035.4036.4043.4044.4045.4045.4045.4045.4048.4048.4048.4049.4049.4049.4049.4049.4051.4051.4051.4051.4051.4051.4051.4051.4051.4051.4051.4057.4057.4057.4057.4057.4057.4057.6210.6210.6210.6215.6215.6215.6216.6216.6216.6216.6217.6217.6217.6217.6218.6218.6218.6218.6218.6219.6219.6219.6219.6219.6219.6219.6219.6221.6221.6221.6221.6221.6221.6221.6221.6221.6221.6221.6221.6221.6221.6221.6221.6221.6221.6221.6221.6221.6222.6223.6223.6223.6223.6223.6225.6225.6229.6229.6229.6229.6229.6229.6231.6231.6231.6231.6231.6231.6231.6250.6250.6250.6250.6250.6250.6250.6250.6250.6250.6250.FORTRAN STOP

Converting ligand atoms to spheres
 Enter name of sphere cluster file:
 Enter cluster number to process (<0 = all):  Generate surfaces as well as pdb files (<N>/Y)?  Enter name for output PDB file name:

Cluster  1:  24 spheres.
   1.   2.   3.   4.   5.   6.   7.   8.   9.  10.  11.  12.  13.  14.  15.  16.  17.  18.  19.  20.  21.  22.  23.  24.FORTRAN STOP

Adding essential hydrogens to receptor
Adding all-atom hydrogens...

Working on structure 1
Pre-treating metals...
Done treating metals
Adding hydrogens...
Treating metals...
Creating di-sulfur bonds...
   Created a bond between residue(A:15) and residue(A:4); changed residue names to "CYX "
   Created a bond between residue(A:25) and residue(A:9); changed residue names to "CYX "
   Created a bond between residue(A:37) and residue(A:27); changed residue names to "CYX "
   Created a bond between residue(A:128) and residue(A:5); changed residue names to "CYX "
   Created a bond between residue(A:544) and residue(A:538); changed residue names to "CYX "
   Created a bond between residue(B:566) and residue(B:555); changed residue names to "CYX "
   Created a bond between residue(B:576) and residue(B:560); changed residue names to "CYX "
   Created a bond between residue(B:588) and residue(B:578); changed residue names to "CYX "
Finding het groups...
Coloring atoms by element (green carbons in hets)...
Running ProtAssign...
  using exhaustive mode
  will sample waters
ERROR: Output from ProtAssign is missing
SKIPPING STRUCTURE 1

NO OUTPUT STRUCTURES WERE WRITTEN
Removing non-polar hydrogens...
Usage: $SCHRODINGER/run applyhtreat.py input_file output_file [options]
  Allowed treatment names for -treatment(-t) option are:
    "All-atom with Osp3/Nsp3-Lp"
    "All-atom with No-Lp"
    "Csp3 United-atom with S-Lp"
    "Csp3 United-atom with No-Lp"
    "All-atom with S-Lp"
    "C sp2/sp3 United-atom with No-Lp"
    "C sp2/sp3, N,O,S United-atom with No-Lp" 
       applyhtreat.py {-h|-help} for a more detailed help message

applyhtreat.py: error: File does not exist: "rec.mae"
m2io_open_file failed for file rec_polh.mae
Renaming polar hydrogens...
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/rename_h_and_his.py", line 157, in ?
    sys.exit(main(sys.argv))
  File "/raid5/people/mysinger/xyz/dockenv/etc/rename_h_and_his.py", line 154, in main
    return handleio(infile=options.infile, outfile=options.outfile)
  File "/raid5/people/mysinger/xyz/dockenv/etc/rename_h_and_his.py", line 126, in handleio
    inf = open(infile, "r")
IOError: [Errno 2] No such file or directory: 'rec_polh.pdb'
grep: rec_hn1.crg: No such file or directory
Generating matching spheres for delphi
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 239.
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Use of uninitialized value in concatenation (.) or string at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 463.
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Use of uninitialized value in concatenation (.) or string at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 463.
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Use of uninitialized value in numeric ge (>=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 470.
Use of uninitialized value in addition (+) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 470.
Use of uninitialized value in numeric lt (<) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 470.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 470.
Use of uninitialized value in numeric ge (>=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 470.
Use of uninitialized value in addition (+) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 470.
Use of uninitialized value in numeric lt (<) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 470.
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Use of uninitialized value in numeric le (<=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 466.
Use of uninitialized value in addition (+) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 465.
Use of uninitialized value in numeric le (<=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 465.
Use of uninitialized value in addition (+) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 464.
Use of uninitialized value in numeric le (<=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 464.
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Use of uninitialized value in concatenation (.) or string at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 575.
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Use of uninitialized value in concatenation (.) or string at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 575.
Use of uninitialized value in numeric ne (!=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 757.
Use of uninitialized value in numeric ne (!=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 757.
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Use of uninitialized value in printf at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 784.
Use of uninitialized value in printf at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 784.
Use of uninitialized value in printf at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 784.
Use of uninitialized value in printf at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 784.
Use of uninitialized value in printf at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres1.pl line 784.
 Enter name of sphere cluster file:
 Enter cluster number to process (<0 = all):  Generate surfaces as well as pdb files (<N>/Y)?  Enter name for output PDB file name:

Cluster  1:   1 spheres.
9001.FORTRAN STOP

Generating faster matching2 spheres for docking
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Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
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Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
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Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
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Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric ne (!=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 620.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 633.
FORTRAN STOP
 Enter name of sphere cluster file:
 Enter cluster number to process (<0 = all):  Generate surfaces as well as pdb files (<N>/Y)?  Enter name for output PDB file name:

Cluster  1:   0 spheres.

Coloring matching spheres
Generating slower matching3 spheres for docking
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
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Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
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Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
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Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
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Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
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Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 259.
Use of uninitialized value in concatenation (.) or string at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 483.
Use of uninitialized value in concatenation (.) or string at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 483.
Use of uninitialized value in concatenation (.) or string at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 483.
Use of uninitialized value in concatenation (.) or string at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 483.
Use of uninitialized value in concatenation (.) or string at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 483.
Use of uninitialized value in concatenation (.) or string at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 483.
Use of uninitialized value in numeric le (<=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 484.
Use of uninitialized value in numeric le (<=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 484.
Use of uninitialized value in numeric le (<=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 485.
Use of uninitialized value in numeric le (<=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 485.
Use of uninitialized value in numeric le (<=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 486.
Use of uninitialized value in numeric le (<=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 486.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 490.
Use of uninitialized value in numeric ge (>=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 490.
Use of uninitialized value in addition (+) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 490.
Use of uninitialized value in numeric lt (<) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 490.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 490.
Use of uninitialized value in numeric ge (>=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 490.
Use of uninitialized value in addition (+) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 490.
Use of uninitialized value in numeric lt (<) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 490.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 490.
Use of uninitialized value in numeric ge (>=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 490.
Use of uninitialized value in addition (+) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 490.
Use of uninitialized value in numeric lt (<) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 490.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 492.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 492.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 492.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 492.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 492.
Use of uninitialized value in subtraction (-) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 492.
Use of uninitialized value in addition (+) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 486.
Use of uninitialized value in numeric le (<=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 486.
Use of uninitialized value in addition (+) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 485.
Use of uninitialized value in numeric le (<=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 485.
Use of uninitialized value in addition (+) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 484.
Use of uninitialized value in numeric le (<=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 484.
Use of uninitialized value in numeric ne (!=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 601.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric ne (!=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 620.
Use of uninitialized value in numeric ne (!=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 601.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric ne (!=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 620.
Use of uninitialized value in numeric ne (!=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 601.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric ne (!=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 620.
Use of uninitialized value in numeric ne (!=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 601.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 609.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 613.
Use of uninitialized value in numeric ne (!=) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 620.
Use of uninitialized value in numeric eq (==) at /raid5/people/mysinger/xyz/dockenv/scripts/makespheres3.pl line 633.
FORTRAN STOP
 Enter name of sphere cluster file:
 Enter cluster number to process (<0 = all):  Generate surfaces as well as pdb files (<N>/Y)?  Enter name for output PDB file name:

Cluster  1:   0 spheres.

Coloring matching spheres
Adding spheres to electrostatic grid
Creating DelPhi electrostatic grid

real	0m28.601s
user	0m3.682s
sys	0m0.608s
make: *** [grids/rec+sph.phi] Error 100