usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 38.0304583333333 16.4042083333333 23.5900416666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1623 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 615 WARNING: removing a crystallographic sphere that is distance 50.1186484055586 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 49.5863676225634 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 48.7992477503496 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 47.8719218018245 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 47.6642504609062 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 46.3215708822574 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 45.6609383499726 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 46.3361387579932 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 45.534912023633 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 45.9671341395132 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 47.2118299899506 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 47.2193278753521 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 47.2012724192897 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 47.1096360949647 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 48.1648250386109 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 48.0532851842619 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 46.8944051566922 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 46.6917056767045 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 47.6230164311334 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 48.8986494905534 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 48.9975602147699 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 50.3177383136404 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 51.349686951334 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 50.291786556057 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 0 Number of spheres polar: 0, nonpolar: 0, out of current total: 0 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 1 Crystallographic spheres are present, so doing continuity based on crystallographic spheres Only 0 spheres are continuous, so increasing continuity by 0.5 to be 3.5 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 4 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 4.5 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 5 After continuity checking, number of spheres is: 0 Final number of output spheres is: 0 Number of polar spheres: 0 Number of nonpolar spheres: 0 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 0