usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 25.7120555555556 22.2250555555556 15.0523888888889 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1444 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 752 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 752 Number of spheres polar: 217, nonpolar: 503, out of current total: 752 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 15.79795 35.52933 12.36572 30.42416 5.20320 24.98874 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 313 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 268 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 201 Spheres center of coords (x y z): 25.8012932338309 18.2741536318408 17.2798484577114 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.84038005646892 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 46 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 18