usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): 24.84872 22.29464 15.12564
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1546
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 713
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 713
Number of spheres polar: 196, nonpolar: 461, out of current total: 713
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.91677 34.79879 12.33160 30.83016 5.17712 25.09178
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 343
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 292
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 254
Spheres center of coords (x y z): 24.343840984252 19.6294094488189 17.5257595669291
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.11278012571209
Final number of output spheres is: 60
Number of polar spheres: 23
Number of nonpolar spheres: 32
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 25