usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): 27.35576 25.9826 12.23688
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1562
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 769
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 769
Number of spheres polar: 234, nonpolar: 479, out of current total: 769
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.62294 37.27229 15.99024 35.95827 2.25000 22.23635
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 365
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 289
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 239
Spheres center of coords (x y z): 28.5043756485356 23.5928267364017 13.3642759414226
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.07643931252314
Final number of output spheres is: 60
Number of polar spheres: 9
Number of nonpolar spheres: 48
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 25