usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 21.9489090909091 15.4958636363636 66.9430909090909 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1727 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 697 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 697 Number of spheres polar: 240, nonpolar: 414, out of current total: 697 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.95027 27.73240 5.77322 25.40934 57.70535 76.80444 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 321 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 256 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 245 Spheres center of coords (x y z): 20.3820759183673 14.8008372653061 67.0601451428571 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.32161451092079 Final number of output spheres is: 60 Number of polar spheres: 24 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 22