usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 38.0871363636364 16.7945 23.7937272727273 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1541 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 448 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 448 Number of spheres polar: 191, nonpolar: 242, out of current total: 448 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 28.26362 48.07671 6.83079 26.77449 13.80207 33.76803 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 215 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 179 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 166 Spheres center of coords (x y z): 39.9181490361446 16.0588907831325 22.6760324698795 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.84611334096278 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 22