usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 26.5562105263158 23.798 15.3377894736842 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1677 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 749 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 749 Number of spheres polar: 280, nonpolar: 369, out of current total: 749 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.55721 36.55584 13.81428 30.44856 5.42133 25.30666 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 174 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 135 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 123 Spheres center of coords (x y z): 26.702177398374 21.9773630894309 16.5854991056911 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.61992095948373 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 19