usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 19.9547727272727 -16.3455454545455 -59.3293181818182 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1841 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 761 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 760 Number of spheres polar: 284, nonpolar: 411, out of current total: 760 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.97805 29.93500 -26.31593 -6.52197 -67.77303 -49.35011 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 352 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 287 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 240 Spheres center of coords (x y z): 20.2151202916667 -15.6767481666667 -58.1540280833334 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.86721061456199 Final number of output spheres is: 60 Number of polar spheres: 11 Number of nonpolar spheres: 45 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 22