usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 25.7120555555556 22.2250555555556 15.0523888888889 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2022 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 751 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 751 Number of spheres polar: 208, nonpolar: 495, out of current total: 751 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 15.79795 35.52933 12.36572 30.42416 5.20320 24.98874 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 176 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 145 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 99 Spheres center of coords (x y z): 25.7535365656566 18.6934711111111 17.0765733333333 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.5384276300877 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 18