usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 23.6650769230769 23.3125769230769 47.8265384615385 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1943 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 844 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 844 Number of spheres polar: 264, nonpolar: 505, out of current total: 844 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.66523 33.66185 13.37700 33.19538 38.91490 57.82180 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 234 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 187 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 178 Spheres center of coords (x y z): 21.7882865168539 20.7151028089888 50.0745948314607 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.82533296819375 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 26