usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 30.9885769230769 -22.2836153846154 -16.5072307692308 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1700 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 785 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 785 Number of spheres polar: 252, nonpolar: 447, out of current total: 785 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 21.00423 40.91830 -30.59525 -12.31351 -26.30876 -8.66870 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 216 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 168 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 147 Spheres center of coords (x y z): 30.3214265306122 -20.522342244898 -17.8966878231292 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.81142152725861 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 26