Distance from surface specified: 1.80 There are 26 ligand heavy atoms Ligand center of coords (x y z): 30.9885769230769 -22.2836153846154 -16.5072307692308 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 16114 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 11970 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 11717 Number of spheres polar: 6098, nonpolar: 4363, out of current total: 11717 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.99680 44.98800 -34.08240 -8.28580 -30.47860 -2.52180 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1023 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 593 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 565 Spheres center of coords (x y z): 29.2070159292035 -18.0020371681416 -20.8005033628319 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 12.3203132405146 Final number of output spheres is: 200 Number of polar spheres: 110 Number of nonpolar spheres: 80 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 26