There are 26 ligand heavy atoms Ligand center of coords (x y z): 30.9885769230769 -22.2836153846154 -16.5072307692308 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 16114 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 9646 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 9646 Number of spheres polar: 5148, nonpolar: 3574, out of current total: 9646 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.00080 42.98600 -33.36540 -10.28680 -28.50420 -4.51000 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1088 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 388 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 366 Spheres center of coords (x y z): 29.5305382513662 -19.7495530054645 -19.8630617486339 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 9.99453699145119 Final number of output spheres is: 120 Number of polar spheres: 52 Number of nonpolar spheres: 64 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 26