usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): -0.140125 24.3759375 67.62375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1513 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 998 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 998 Number of spheres polar: 300, nonpolar: 491, out of current total: 998 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.12441 9.79756 14.42228 34.34015 57.65183 77.59697 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 320 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 268 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 231 Spheres center of coords (x y z): -2.62320554112554 24.0073562337662 66.9862453679654 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.68997413968702 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 32