usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 45.2136666666667 -14.7246060606061 16.0694848484848 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1638 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1018 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1018 Number of spheres polar: 260, nonpolar: 544, out of current total: 1018 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 35.22524 55.19028 -24.34386 -4.90909 6.10324 26.05411 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 321 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 266 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 223 Spheres center of coords (x y z): 47.1097880269059 -15.7418998654708 14.9837408520179 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.19038004775572 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 33